NEW paper: Benchmarking Hi-C for virus–host inference

November 26, 2025

NEW paper: Benchmarking Hi-C for virus–host inference

11.26.25 Virus host benchmarking paper graphic for news story - read paper for details

🚨NEW paper: Benchmarking Hi-C for virus–host inference journals.plos.org/plosbiology/... 

A clear baseline for anyone mapping virus–host interactions that establishes robust, benchmarked thresholds for Hi-C linkages. Key results: 👇

  • Synthetic community (4 hosts, 9 phages) provides a ground-truth benchmark
  • Raw Hi-C links: ~100% sensitivity but only ~26% specificity
  • Z-score ≥0.5: specificity → ~99%, sensitivity → ~62%
  • In soils: broad host links recovered, but genus/species resolution remains challenging
  • Practical thresholds + guidance offered for applying Hi-C in complex microbiomes